I double checked my documentation (https://drive.google.com/drive/folders/0B5vtgOg9bRJjVGlIVDZxUUxfSDA), chapter 8. I remember it was kind of tricky to get the modulation running on the 2-PT-version. For the calibration of a 2-PT-Delay, I had to modify the code a bit (downloadable version!), so it might be, that that is the reason, why it isn't running on a 3-PT-Version (what is the complete schematic of that and what design is that - looks awesome and I see a lot of knobs and a microcontroller on your breadboard as well).
While I cannot really help with the 3-PT-Delay: What 2-PT-Design were you using... maybe I can help with that one.
P.S. As you mentioned the USB-Cable in your 1-PT-Design: Are all the GND (Taprecise, Delay etc.) connected to each other? Just an idea...
While I cannot really help with the 3-PT-Delay: What 2-PT-Design were you using... maybe I can help with that one.
P.S. As you mentioned the USB-Cable in your 1-PT-Design: Are all the GND (Taprecise, Delay etc.) connected to each other? Just an idea...